Source code for woodwork.accessor_utils

from functools import wraps

import numpy as np
import pandas as pd

from woodwork.exceptions import WoodworkNotInitError
from woodwork.utils import _get_column_logical_type, import_or_none

dd = import_or_none('dask.dataframe')
ks = import_or_none('databricks.koalas')


[docs]def init_series(series, logical_type=None, semantic_tags=None, use_standard_tags=True, description=None, origin=None, metadata=None): """Initializes Woodwork typing information for a series, numpy.ndarray or pd.api.extensions. ExtensionArray, returning a new Series. The dtype of the returned series will be converted to match the dtype associated with the LogicalType. Args: series (pd.Series, dd.Series, ks.Series, numpy.ndarray or pd.api.extensions.ExtensionArray): The original series from which to create the Woodwork initialized series. logical_type (LogicalType or str, optional): The logical type that should be assigned to the series. If no value is provided, the LogicalType for the series will be inferred. semantic_tags (str or list or set, optional): Semantic tags to assign to the series. Defaults to an empty set if not specified. There are two options for specifying the semantic tags: (str) If only one semantic tag is being set, a single string can be passed. (list or set) If multiple tags are being set, a list or set of strings can be passed. use_standard_tags (bool, optional): If True, will add standard semantic tags to the series based on the inferred or specified logical type of the series. Defaults to True. description (str, optional): Optional text describing the contents of the series. origin (str, optional): Optional text specifying origin of the column (i.e. "base" or "engineered"). metadata (dict[str -> json serializable], optional): Metadata associated with the series. Returns: Series: A series with Woodwork typing information initialized """ if not _is_series(series): if isinstance(series, (np.ndarray, pd.api.extensions.ExtensionArray)) and series.ndim == 1: series = pd.Series(series) elif isinstance(series, np.ndarray) and series.ndim != 1: raise ValueError(f'np.ndarray input must be 1 dimensional. Current np.ndarray is {series.ndim} dimensional') else: raise TypeError(f'Input must be of series type. The current input is of type {type(series)}') logical_type = _get_column_logical_type(series, logical_type, series.name) new_series = logical_type.transform(series) new_series.ww.init(logical_type=logical_type, semantic_tags=semantic_tags, use_standard_tags=use_standard_tags, description=description, origin=origin, metadata=metadata) return new_series
def _is_series(data): if isinstance(data, pd.Series): return True elif _is_dask_series(data): return True elif _is_koalas_series(data): return True return False def _is_dataframe(data): if isinstance(data, pd.DataFrame): return True elif _is_dask_dataframe(data): return True elif _is_koalas_dataframe(data): return True return False
[docs]def get_invalid_schema_message(dataframe, schema): """Return a message indicating the reason that the provided schema cannot be used to initialize Woodwork on the dataframe. If the schema is valid for the dataframe, None will be returned. Args: dataframe (DataFrame): The dataframe against which to check the schema. schema (ww.TableSchema): The schema to use in the validity check. Returns: str or None: The reason that the schema is invalid for the dataframe """ dataframe_cols = set(dataframe.columns) schema_cols = set(schema.columns.keys()) df_cols_not_in_schema = dataframe_cols - schema_cols if df_cols_not_in_schema: return f'The following columns in the DataFrame were missing from the typing information: '\ f'{df_cols_not_in_schema}' schema_cols_not_in_df = schema_cols - dataframe_cols if schema_cols_not_in_df: return f'The following columns in the typing information were missing from the DataFrame: '\ f'{schema_cols_not_in_df}' logical_types = schema.logical_types for name in dataframe.columns: df_dtype = dataframe[name].dtype valid_dtype = logical_types[name]._get_valid_dtype(type(dataframe[name])) if str(df_dtype) != valid_dtype: return f'dtype mismatch for column {name} between DataFrame dtype, '\ f'{df_dtype}, and {logical_types[name]} dtype, {valid_dtype}' if schema.index is not None and isinstance(dataframe, pd.DataFrame): # Index validation not performed for Dask/Koalas if not pd.Series(dataframe.index, dtype=dataframe[schema.index].dtype).equals(pd.Series(dataframe[schema.index].values)): return 'Index mismatch between DataFrame and typing information' elif not dataframe[schema.index].is_unique: return 'Index column is not unique'
[docs]def is_schema_valid(dataframe, schema): """Check if a schema is valid for initializing Woodwork on a dataframe Args: dataframe (DataFrame): The dataframe against which to check the schema. schema (ww.TableSchema): The schema to use in the validity check. Returns: boolean: Boolean indicating whether the schema is valid for the dataframe """ invalid_schema_message = get_invalid_schema_message(dataframe, schema) if invalid_schema_message: return False return True
def _is_dask_series(data): if dd and isinstance(data, dd.Series): return True return False def _is_dask_dataframe(data): if dd and isinstance(data, dd.DataFrame): return True return False def _is_koalas_dataframe(data): if ks and isinstance(data, ks.DataFrame): return True return False def _is_koalas_series(data): if ks and isinstance(data, ks.Series): return True return False def _check_column_schema(method): '''Decorator for WoodworkColumnAccessor that checks schema initialization''' @wraps(method) def wrapper(self, *args, **kwargs): if self._schema is None: msg = ("Woodwork not initialized for this Series. Initialize by " "calling Series.ww.init") raise WoodworkNotInitError(msg) return method(self, *args, **kwargs) return wrapper def _check_table_schema(method): '''Decorator for WoodworkTableAccessor that checks schema initialization''' @wraps(method) def wrapper(self, *args, **kwargs): if self._schema is None: msg = ("Woodwork not initialized for this DataFrame. Initialize by " "calling DataFrame.ww.init") raise WoodworkNotInitError(msg) return method(self, *args, **kwargs) return wrapper